Abstract / Summary
The ASAP CRN Cloud is pleased to announce the 5.1.0 release of data which expands to include the Mouse Bulk RNAseq Collection. Additionally, the Mouse scRNAseq Collection of Datasets has been expanded, as well as the release of a large tranche of uncurated Datasets. New Collections Mouse Bulk RNAseq Collection, v1.0.0 - DOI: 10.5281/zenodo.22758102 Updated Collections Mouse scRNAseq Collection, v1.1.0 - DOI: 10.5281/zenodo.22757930 Unchanged collections Invitro Bulk RNAseq Collection, v1.0.0 - DOI: 10.5281/zenodo.20400939 Mouse Spatial RNAseq Collection, v1.0.1 - DOI: 10.5281/zenodo.20403845 PMDBS scATACseq Collection, v1.0.0 - DOI: 10.5281/zenodo.20400469 PMDBS scRNAseq Collection, v3.1.2 - DOI: 10.5281/zenodo.20403941 PMDBS Bulk RNAseq Collection, v1.2.2 - DOI: 10.5281/zenodo.20403867 PMDBS Spatial RNAseq Collection, v1.1.2 - DOI: 10.5281/zenodo.20403929 New and Uncurated biederer-pmdbs-spatial-geomx-lamda, DOI: 10.5281/zenodo.21727340 biederer-mouse-spatial-geomx-lamda, DOI: 10.5281/zenodo.21727342 desjardins-mouse-bulk-rnaseq-striatum-pink1, DOI: 10.5281/zenodo.20276414 desjardins-mouse-bulk-rnaseq-nigra-pink1, DOI: 10.5281/zenodo.20276416 desjardins-mouse-sc-rnaseq-colon-immune-lrrk2, DOI: 10.5281/zenodo.20276410 desjardins-ipsc-sc-rnaseq-myeloid-pink1, DOI: 10.5281/zenodo.20276412 desjardins-mouse-sc-rnaseq-colon-immune-pink1, DOI: 10.5281/zenodo.20276571 rio-hesc-spheroids-sc-rnaseq-irradiated, DOI: 10.5281/zenodo.19600803 rio-hesc-sc-rnaseq-irradiated, DOI: 10.5281/zenodo.19600807 rio-hesc-sc-rnaseq-wt-dopaminergic, DOI: 10.5281/zenodo.19600810 rio-hesc-targeted-ngs-mutant-zygosity, DOI: 10.5281/zenodo.19600812 rio-hesc-wgs-iscore-pd-genotyping-and-snps, DOI: 10.5281/zenodo.19600814 Newly Curated cragg-mouse-sn-rnaseq-striatum, DOI: 10.5281/zenodo.15400039 (bumped to v2.0) A corrupted FASTQ file was replaced and DATA.file_MD5 was updated accordingly CONDITION was re-encoded for clarity SAMPLE was re-encoded and de-duplicated for batch and replicate status schlossmacher-mouse-sn-rnaseq-osn-aav-transd, DOI: 10.5281/zenodo.17358327 Fixed an issue where only one subject/mouse ID was assigned to four assayed mice – ASAP sample and subject IDs have been updated accordingly The sample source was updated to better reflect the source tissue CONDITION was re-encoded for clarity Replicate status was updated alessi-mouse-sn-rnaseq-dorsal-striatum-g2019s,DOI: 10.5281/zenodo.17212215 CONDITION was re-encoded for clarity SAMPLE was re-encoded and de-duplicated for replicate status lee-mouse-liver-bulk-rnaseq-g2019s, DOI: 10.5281/zenodo.18273810 lee-mouse-bulk-rnaseq-striatum-g2019s-hf-diet, DOI: 10.5281/zenodo.18273802 Updated voet-pmdbs-sn-multimodal, DOI: 10.5281/zenodo.18988753 An additional 91 samples from 48 donors were added by the contributors Fixed DATA.gcp_uri pathing for ATAC samples Replicate status was updated voet-pmdbs-sn-atacseq-10x, DOI: 10.5281/zenodo.18988729 Replicate status was updated voet-pmdbs-sn-rnaseq, DOI: 10.5281/zenodo.18988768 Replicate status was updated voet-pmdbs-sn-atacseq-hydrop, DOI: 10.5281/zenodo.18988735 Replicate status was updated voet-pmdbs-sn-atacseq-scalebio-10x DOI: 10.5281/zenodo.18988717 Replicate status was updated voet-pmdbs-sn-atacseq-scalebio-hydrop, DOI: 10.5281/zenodo.18988743 Replicate status was updated voet-pmdbs-sn-rnaseq-parsebio, DOI: 10.5281/zenodo.18988761 Replicate status and batch was updated -------------- See also 10.5281/zenodo.15831269 for additional "Urgent" uncurated Dataset releases between Major/Minor updates. The metadata can be browsed on ASAP CRN Cloud Explorer and exposed in Verily Workbench.